Basic Information
Locus ID:
AH04.1869
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 37962964 | 37968319 | + | AH04.1869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 62,012.54 Da | 44.67 | 93.77 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 382 | 547 | 7.4E-37 | IPR025886 |
| Pfam | PF00069 | Protein kinase domain | 39 | 309 | 3.3E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 28 | 333 | 1.15E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 129 | 323 | 1.6E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 109 | 1.3E-21 | - |
| SMART | SM00220 | serkin_6 | 38 | 309 | 1.4E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 38 | 328 | 36.654423 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 44 | 66 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.4 | - | 5.11E-48 |
| RefSeq | XP_025877562.1 | putative cysteine-rich receptor-like protein kinase 39 [Oryza sativa Japonica Group] | 7.49E-234 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 7.14E-47 | |
| TrEMBL | A0A0E0GI69 | Protein kinase domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 7.43E-218 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH04.1869 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g01890.1, LOC_Os12g30180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G226700 |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G071400.1, TraesCS2B02G071800.1 ... |