Basic Information
Locus ID:
AH04.1818
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 36978430 | 36982999 | + | AH04.1818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 74,493.40 Da | 43.19 | 82.70 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 242 | 289 | 6.6E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 346 | 376 | 4.2E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 318 | 338 | 0.16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 419 | 443 | 0.017 | IPR002885 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 484 | 675 | 1.49E-7 | IPR011047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 295 | 396 | 1.9E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 397 | 544 | 4.6E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 155 | 294 | 5.8E-23 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 546 | 683 | 4.9E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 633 | 673 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 582 | 0.22 | IPR001680 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 245 | 278 | 9.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 346 | 378 | 4.6E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 243 | 277 | 9.843305 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | 11.893068 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 150 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68930.2 | - | 5.84E-77 |
| RefSeq | XP_022683828.1 | pentatricopeptide repeat-containing protein At2g13600-like [Setaria italica] | 2.16E-241 |
| Q9CAA8 | Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1 | 9.33E-76 | |
| TrEMBL | A0A1E5UQL7 | Putative pentatricopeptide repeat-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0023792 PE=4 SV=1 | 4.0E-241 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |