Basic Information
Locus ID:
AH04.1750
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 35583471 | 35587777 | + | AH04.1750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.44 | 54,432.06 Da | 82.12 | 62.36 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 454 | 497 | 4.6641E-17 | - |
| Pfam | PF13639 | Ring finger domain | 454 | 497 | 6.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 454 | 502 | 1.39E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 431 | 502 | 1.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 455 | 496 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 455 | 497 | 11.899158 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 236 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13430.1 | RING/U-box superfamily protein. | 9.69E-11 |
| RefSeq | XP_034569610.1 | probable E3 ubiquitin-protein ligase RHY1A [Setaria viridis] | 3.33E-65 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 5.76E-9 | |
| TrEMBL | A0A1E5WDV2 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003591 PE=4 SV=1 | 6.83E-71 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16598, jg16599, jg35766 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30236250, pistato.v30239070 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000600 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697316, gene-LOC120108756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.982 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1750, BH04.1754, CH04.2001 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684210, gene-QOZ80_9BG0710320 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066435 |
| Poaceae | Oryza coarctata | 2 | Oco21G007690, Oco22G008890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g37230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G176800, gene-BS78_05G177000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103171 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005430, Chr17G004780 |
| Poaceae | Zea mays | 1 | Zm00001eb200510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43061, nbis-gene-43062 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18120, Zma_g18121 |