Basic Information
Locus ID:
AH04.1721
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 34999386 | 35017610 | - | AH04.1721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 130,283.37 Da | 44.09 | 78.09 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 168 | 8.21815E-33 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 193 | 521 | 7.46328E-164 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 195 | 516 | 6.1E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1091 | 7.1E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 58 | 177 | 4.7E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 620 | 872 | 4.7E-76 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 190 | 547 | 4.71E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 182 | 1.29E-38 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 797 | 3.1E-40 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 191 | 520 | 1.4E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 1.2E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 49 | 190 | 7.0E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 53 | 156 | 2.7E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 195 | 519 | 40.532429 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 175 | 37.317947 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 196 | 211 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 435 | 452 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| Coils | Coil | Coil | 528 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034607286.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Setaria viridis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6TUC5 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_8G169700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology