Basic Information
Locus ID:
AH04.1632
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 32912555 | 32914636 | + | AH04.1632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 71,657.71 Da | 46.91 | 89.97 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 205 | 249 | 1.45642E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 408 | 587 | 4.6E-27 | IPR000719 |
| Pfam | PF01476 | LysM domain | 209 | 250 | 5.4E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 205 | 250 | 4.58E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 355 | 664 | 3.84E-52 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 359 | 445 | 2.2E-12 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 193 | 261 | 2.5E-9 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 447 | 676 | 4.4E-40 | - |
| SMART | SM00257 | LysM_2 | 206 | 250 | 0.0078 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 378 | 665 | 27.962011 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 205 | 249 | 10.884146 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 7.42E-87 |
| RefSeq | XP_039777306.1 | lysM domain receptor-like kinase 4 [Panicum virgatum] | 8.2999999977734E-315 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 7.2E-86 | |
| TrEMBL | A0A3L6Q285 | LysM domain receptor-like kinase 4 OS=Panicum miliaceum OX=4540 GN=C2845_PM17G11510 PE=4 SV=1 | 2.9000000000435E-314 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology