Basic Information
Locus ID:
AH04.159
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 1454134 | 1464626 | + | AH04.159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 149,327.58 Da | 35.15 | 81.72 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 1159 | 1323 | 3.34258E-42 | - |
| CDD | cd09279 | RNase_HI_like | 530 | 607 | 1.28311E-27 | - |
| CDD | cd10320 | RGL4_N | 727 | 1008 | 1.70511E-68 | - |
| CDD | cd10316 | RGL4_M | 1047 | 1147 | 2.78894E-31 | IPR029413 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 409 | 473 | 2.8E-13 | IPR041577 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1071 | 1141 | 1.1E-21 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1157 | 1323 | 4.5E-42 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 716 | 914 | 6.3E-68 | IPR010325 |
| Pfam | PF13456 | Reverse transcriptase-like | 534 | 619 | 1.5E-12 | IPR002156 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 1047 | 1141 | 1.08E-7 | IPR013784 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 529 | 631 | 2.13E-14 | IPR012337 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1154 | 1324 | 1.87E-32 | IPR008979 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 370 | 492 | 1.63E-24 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 531 | 684 | 1.2E-18 | IPR036397 |
| Gene3D | G3DSA:2.60.120.260 | - | 1154 | 1335 | 9.1E-15 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 720 | 1011 | 1.8E-10 | IPR014718 |
| Gene3D | G3DSA:3.10.20.370 | - | 432 | 486 | 8.7E-8 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 1044 | 1145 | 4.6E-8 | - |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 526 | 685 | 12.915606 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 200 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 1.35E-220 |
| RefSeq | XP_025805461.1 | rhamnogalacturonate lyase B-like [Panicum hallii] | 0 |
| TrEMBL | A0A2T8KGR3 | Rhamnogalacturonan endolyase OS=Panicum hallii OX=206008 GN=PAHAL_3G017900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology