Basic Information
Locus ID:
AH04.1455
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 30016867 | 30018119 | + | AH04.1455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 40,866.59 Da | 53.96 | 76.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 326 | 369 | 1.80678E-10 | - |
| Pfam | PF13639 | Ring finger domain | 326 | 369 | 8.3E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 374 | 2.12E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 372 | 2.5E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 326 | 368 | 7.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 369 | 11.397556 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 2.37E-112 |
| TrEMBL | A0A8T0PAI7 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG104801 PE=4 SV=1 | 5.36E-111 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||