Basic Information
Locus ID:
AH04.1381
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 28552033 | 28556584 | - | AH04.1381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 72,782.09 Da | 48.13 | 89.89 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 151 | 197 | 4.5E-19 | IPR041101 |
| Pfam | PF18511 | F-box | 92 | 131 | 4.5E-18 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 91 | 133 | 4.97E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 509 | 613 | 3.14E-7 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 168 | 522 | 1.46E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 131 | 663 | 1.2E-157 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 88 | 130 | 2.3E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 214 | 239 | 44.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 453 | 477 | 8.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 536 | 570.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 373 | 398 | 670.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 94 | 135 | 8.4E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 189 | 213 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 423 | 452 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 562 | 586 | 230.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 4.13E-233 |
| RefSeq | XP_039825053.1 | transport inhibitor response 1-like protein Os11g0515500 [Panicum virgatum] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 8.57E-281 | |
| TrEMBL | A0A3L6Q2N1 | Transport inhibitor response 1-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G10000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology