Basic Information
Locus ID:
AH04.1287
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 26342931 | 26343510 | + | AH04.1287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 6,333.06 Da | 61.25 | 82.71 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 8 | 45 | 2.9E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 52 | 1.34E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 58 | 4.7E-17 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 51 | 15.38353 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 28 | 49 | 7.9E-13 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 7 | 27 | 7.9E-13 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 6.05E-15 |
| RefSeq | XP_015630915.1 | ubiquitin [Oryza sativa Japonica Group] | 9.42E-15 |
| P69310 | Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1 | 1.69E-14 | |
| TrEMBL | B9FKK7 | Os05g0457400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0457400 PE=4 SV=1 | 8.71E-14 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH04.1287.