Basic Information
Locus ID:
AH04.1234
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 24564500 | 24571558 | + | AH04.1234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 111,107.29 Da | 49.66 | 81.80 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 794 | 956 | 5.56266E-60 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 557 | 698 | 1.5E-7 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 383 | 955 | 6.2E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 110 | 203 | 8.8E-19 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 108 | 203 | 3.01E-19 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 381 | 958 | 1.16E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 371 | 605 | 1.4E-62 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 703 | 965 | 7.9E-58 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 106 | 215 | 1.1E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 216 | 302 | 5.7E-13 | - |
| SMART | SM00695 | dusp | 100 | 205 | 1.9E-19 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 77 | 202 | 14.636233 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 383 | 958 | 56.683228 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 384 | 399 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 900 | 917 | - | IPR018200 |
| Coils | Coil | Coil | 273 | 293 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_025827282.1 | ubiquitin carboxyl-terminal hydrolase 5 [Panicum hallii] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6Q129 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum miliaceum OX=4540 GN=C2845_PM17G08520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology