Basic Information
Locus ID:
AH04.1219
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 24036300 | 24037475 | + | AH04.1219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 42,907.42 Da | 35.54 | 84.07 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 42 | 380 | 9.1E-56 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 281 | 351 | 3.66E-14 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 40 | 384 | 1.99E-49 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 280 | 351 | 1.1E-81 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 58 | 379 | 1.1E-81 | - |
| SMART | SM00636 | 2g34 | 39 | 380 | 1.3E-67 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 39 | 391 | 52.501457 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 9.93E-59 |
| RefSeq | XP_004979247.1 | chitinase-3-like protein 1 [Setaria italica] | 8.51E-250 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 8.52E-69 | |
| TrEMBL | A0A1E5UN95 | Chitinase-3-like protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024628 PE=4 SV=1 | 2.29E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology