Basic Information
Locus ID:
AH04.1181
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 22025116 | 22030051 | - | AH04.1181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 65,041.64 Da | 50.16 | 78.83 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 233 | - | - |
| Coils | Coil | Coil | 257 | 284 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039815119.1 | uncharacterized protein LOC120678020 [Panicum virgatum] | 1.78E-10 |
| TrEMBL | Q2QTF6 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g19810 PE=4 SV=2 | 2.25E-7 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |