Basic Information
Locus ID:
AH04.1103
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH04 | 18354384 | 18364494 | - | AH04.1103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 205,108.91 Da | 41.32 | 85.39 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01171 | YXKO-related | 1571 | 1798 | 8.24391E-38 | IPR000631 |
| CDD | cd09279 | RNase_HI_like | 1071 | 1195 | 2.88768E-44 | - |
| CDD | cd00303 | retropepsin_like | 438 | 520 | 6.35331E-8 | - |
| CDD | cd01647 | RT_LTR | 659 | 838 | 2.4548E-78 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 903 | 1000 | 2.0E-22 | IPR041577 |
| Pfam | PF17921 | Integrase zinc binding domain | 1326 | 1372 | 2.3E-7 | IPR041588 |
| Pfam | PF13456 | Reverse transcriptase-like | 1075 | 1194 | 1.1E-23 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 675 | 838 | 3.7E-23 | IPR000477 |
| Pfam | PF01256 | Carbohydrate kinase | 1565 | 1735 | 1.7E-22 | IPR000631 |
| SUPERFAMILY | SSF53613 | Ribokinase-like | 1563 | 1806 | 2.08E-25 | IPR029056 |
| SUPERFAMILY | SSF50630 | Acid proteases | 435 | 514 | 5.34E-5 | IPR021109 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1070 | 1192 | 5.56E-20 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 618 | 1038 | 1.22E-118 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1390 | 1515 | 1.26E-23 | IPR012337 |
| Gene3D | G3DSA:1.10.340.70 | - | 1282 | 1371 | 1.5E-12 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 848 | 931 | 6.2E-20 | IPR043128 |
| Gene3D | G3DSA:3.40.1190.20 | - | 1561 | 1807 | 2.3E-37 | IPR029056 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 619 | 763 | 1.1E-59 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1381 | 1469 | 8.4E-22 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1072 | 1201 | 1.2E-28 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 419 | 524 | 6.6E-12 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1470 | 1539 | 3.6E-8 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 701 | 838 | 1.1E-59 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 932 | 1002 | 2.9E-6 | - |
| ProSiteProfiles | PS51383 | YjeF C-terminal domain profile. | 1571 | 1735 | 20.011059 | IPR000631 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 656 | 838 | 10.515537 | IPR000477 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1387 | 1473 | 12.484215 | IPR001584 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1067 | 1200 | 11.865438 | IPR002156 |
| Hamap | MF_01965 | ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. | 1516 | 1809 | 16.263361 | IPR000631 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19150.1 | pfkB-like carbohydrate kinase family protein. | 2.37E-94 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 0 |
| C5Y210 | ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Sorghum bicolor OX=4558 GN=Sb05g010020 PE=3 SV=1 | 2.29E-121 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |