Basic Information
Locus ID:
AH03.887
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 11021802 | 11026818 | - | AH03.887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 95,393.80 Da | 65.37 | 53.73 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 368 | 396 | 6.3E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 402 | 428 | 9.0E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 361 | 397 | 2.63E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 360 | 398 | 7.8E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 399 | 431 | 2.8E-9 | - |
| SMART | SM00547 | zf_4 | 403 | 427 | 4.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 370 | 394 | 6.2E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 368 | 397 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 401 | 430 | 9.450083 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 372 | 391 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 405 | 424 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 843 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 6.03E-138 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 1.84E-19 | |
| TrEMBL | A0A8T0VF23 | Zinc finger protein VAR3, chloroplastic OS=Panicum virgatum OX=38727 GN=PVAP13_2NG289200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology