Basic Information
Locus ID:
AH03.879
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 10947286 | 10950850 | + | AH03.879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 87,414.92 Da | 49.39 | 76.65 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 728 | 776 | 3.6E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 730 | 776 | 2.52E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 721 | 780 | 1.4E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 731 | 770 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 731 | 771 | 10.48287 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 335 | - | - |
| Coils | Coil | Coil | 678 | 698 | - | - |
| Coils | Coil | Coil | 537 | 578 | - | - |
| Coils | Coil | Coil | 600 | 631 | - | - |
| Coils | Coil | Coil | 470 | 490 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03365.1 | RING/U-box superfamily protein. | 8.65E-46 |
| RefSeq | XP_025804032.1 | putative E3 ubiquitin-protein ligase RF4 [Panicum hallii] | 0 |
| Q9ZVT8 | Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana OX=3702 GN=RF4 PE=3 SV=1 | 8.55E-45 | |
| TrEMBL | A0A1E5W4Z8 | Putative E3 ubiquitin-protein ligase RF4 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006575 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0679s00005.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.879, BH03.1007, CH03.1169 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0634630 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002218 |
| Poaceae | Oryza coarctata | 2 | Oco13G005350, Oco14G006640 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G079300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703507 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G006820, Chr28G006320 |
| Poaceae | Zea mays | 1 | Zm00001eb094680_P002 |