Basic Information
Locus ID:
AH03.861
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 10734561 | 10736150 | - | AH03.861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 57,007.46 Da | 79.50 | 63.70 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 283 | 392 | 1.83414E-24 | - |
| Pfam | PF14555 | UBA-like domain | 7 | 43 | 9.2E-5 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 265 | 395 | 6.26E-19 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 422 | 526 | 1.5E-7 | IPR029071 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 285 | 401 | 2.9E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 410 | 528 | 4.7E-8 | - |
| SMART | SM00594 | 45neu3 | 271 | 397 | 8.8E-5 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 446 | 527 | 11.938525 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 9.51E-18 |
| RefSeq | XP_004959154.1 | putative plant UBX domain-containing protein 14 [Setaria italica] | 8.1E-122 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 1.05E-16 | |
| TrEMBL | A0A1E5V996 | UBX domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017258 PE=4 SV=1 | 2.57E-133 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |