Basic Information
Locus ID:
AH03.82
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 829947 | 830381 | + | AH03.82 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 16,069.39 Da | 32.59 | 94.17 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 49 | 117 | 6.23014E-20 | - |
| Pfam | PF00240 | Ubiquitin family | 49 | 118 | 5.6E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 48 | 119 | 2.99E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 42 | 119 | 2.8E-22 | - |
| SMART | SM00213 | ubq_7 | 47 | 119 | 2.0E-18 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 47 | 118 | 18.366758 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 57 | 77 | 8.0E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 100 | 121 | 8.0E-7 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 1.45E-23 |
| RefSeq | XP_039793072.1 | ubiquitin-like [Panicum virgatum] | 3.13E-31 |
| P0CG54 | Polyubiquitin-B OS=Cavia porcellus OX=10141 GN=UBB PE=2 SV=1 | 1.52E-22 | |
| TrEMBL | A0A8T0VAB7 | Ubiquitin-like domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG010300 PE=4 SV=1 | 5.63E-38 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH03.82.