Basic Information
Locus ID:
AH03.790
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHASE domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 9541715 | 9544950 | + | AH03.790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 117,415.96 Da | 41.54 | 91.08 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03924 | CHASE domain | 147 | 331 | 5.1E-34 | IPR006189 |
| Pfam | PF00069 | Protein kinase domain | 701 | 973 | 2.9E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 686 | 986 | 2.16E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 784 | 985 | 7.6E-58 | - |
| Gene3D | G3DSA:6.10.250.1190 | - | 95 | 147 | 4.8E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 687 | 783 | 5.2E-31 | - |
| Gene3D | G3DSA:3.30.450.350 | CHASE domain | 148 | 365 | 1.1E-62 | IPR042240 |
| SMART | SM00220 | serkin_6 | 701 | 979 | 1.3E-36 | IPR000719 |
| SMART | SM01079 | CHASE_2 | 144 | 333 | 1.4E-22 | IPR006189 |
| ProSiteProfiles | PS50839 | CHASE domain profile. | 144 | 372 | 31.075493 | IPR006189 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 701 | 986 | 38.887592 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 827 | 839 | - | IPR008271 |
| Coils | Coil | Coil | 432 | 452 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27320.1 | histidine kinase 3. Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. | 6.1E-113 |
| RefSeq | XP_015620760.1 | probable kinase CHARK [Oryza sativa Japonica Group] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A2ZK79 | CHASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2178, AH03.790 |
| Poaceae | Oryza coarctata | 1 | Oco23G006040 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g26940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G114800, gene-BS78_04G115200 |