Basic Information
Locus ID:
AH03.661
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transmembrane amino acid transporter protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 7769503 | 7781912 | + | AH03.661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 222,368.44 Da | 44.35 | 86.02 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 894 | 1018 | 5.37878E-45 | - |
| CDD | cd00303 | retropepsin_like | 398 | 475 | 3.13138E-7 | - |
| CDD | cd01647 | RT_LTR | 661 | 743 | 5.22926E-27 | - |
| Pfam | PF01490 | Transmembrane amino acid transporter protein | 1607 | 1997 | 9.5E-82 | IPR013057 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 784 | 837 | 7.7E-9 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 898 | 1017 | 4.1E-23 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1179 | 1315 | 2.12E-30 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 621 | 857 | 1.22E-57 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 893 | 1015 | 1.26E-19 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1259 | 1346 | 1.3E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1173 | 1258 | 2.1E-20 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 380 | 488 | 8.2E-11 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 704 | 731 | 9.5E-28 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 895 | 1026 | 4.6E-29 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 622 | 751 | 9.5E-28 | - |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 890 | 1023 | 11.885252 | IPR002156 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1178 | 1259 | 11.681875 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1051 | 1090 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1051 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 295 | - | - |
| Coils | Coil | Coil | 238 | 258 | - | - |
| Coils | Coil | Coil | 1358 | 1378 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11900.1 | aromatic and neutral transporter 1. encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters. | 1.34E-129 |
| RefSeq | XP_045807592.1 | uncharacterized protein LOC123901478 [Trifolium pratense] | 5.31E-243 |
| Q9SF09 | Amino acid transporter ANT1 OS=Arabidopsis thaliana OX=3702 GN=ANT1 PE=1 SV=1 | 1.29E-128 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |