Basic Information
Locus ID:
AH03.59
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 494191 | 505018 | + | AH03.59 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 119,923.51 Da | 47.94 | 79.10 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 937 | 1042 | 1.43846E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 347 | 700 | 7.1337E-80 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 359 | 777 | 1.8E-67 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 816 | 852 | 8.2E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 932 | 1032 | 2.0E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 710 | 1089 | 7.75E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 811 | 858 | 4.99E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 332 | 700 | 1.3E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 317 | 405 | 3.4E-12 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 807 | 867 | 1.1E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 562 | 714 | 1.0E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 469 | 561 | 4.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 715 | 1090 | 1.1E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 343 | 679 | 1.3E-26 | IPR014001 |
| SMART | SM00184 | ring_2 | 816 | 854 | 0.0018 | IPR001841 |
| SMART | SM00490 | helicmild6 | 949 | 1032 | 7.1E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 489 | 662 | 12.263268 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 919 | 1085 | 13.49159 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 816 | 855 | 10.881201 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 831 | 840 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 3.86E-289 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 3.72E-288 | |
| TrEMBL | A0A368Q4H2 | Helicase-like transcription factor CHR28 OS=Setaria italica OX=4555 GN=SETIT_2G297900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology