Basic Information
Locus ID:
AH03.490
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 5533887 | 5534633 | + | AH03.490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 25,645.85 Da | 29.61 | 93.70 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 164 | 219 | 4.2E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 44 | 103 | 4.4E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 10 | 38 | 9.5E-9 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 113 | 163 | 3.2E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 107 | 172 | 2.76E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 42 | 105 | 1.08E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 165 | 226 | 8.04E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 38 | 5.51E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 4 | 41 | 3.6E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 163 | 1.4E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 42 | 109 | 1.2E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 164 | 229 | 9.9E-17 | - |
| SMART | SM00213 | ubq_7 | 111 | 167 | 1.0E-6 | IPR000626 |
| SMART | SM00213 | ubq_7 | 42 | 106 | 5.3E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 168 | 222 | 0.02 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 193 | 226 | 10.440514 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 111 | 172 | 13.010011 | IPR000626 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 130 | 157 | 9.066799 | IPR001736 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 10 | 38 | 11.572835 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 42 | 110 | 14.773819 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 87 | 108 | 3.6E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 66 | 86 | 3.6E-7 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 8.04E-61 |
| RefSeq | XP_022679975.1 | polyubiquitin-B-like [Setaria italica] | 4.41E-82 |
| P0CG67 | Polyubiquitin-B OS=Gorilla gorilla gorilla OX=9595 GN=UBB PE=3 SV=1 | 1.36E-60 | |
| TrEMBL | K4A070 | Polyubiquitin OS=Setaria italica OX=4555 GN=SETIT_2G068900v2 PE=4 SV=1 | 4.7E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH03.490.