Basic Information
Locus ID:
AH03.4143
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 54895329 | 54897240 | + | AH03.4143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 62,966.01 Da | 36.97 | 86.25 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 388 | 570 | 5.06931E-82 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 1.10087E-92 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 434 | 558 | 4.3E-13 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 216 | 8.7E-38 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 355 | 1.61E-16 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 224 | 1.6E-46 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 388 | 580 | 1.97E-37 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 381 | 572 | 1.1E-52 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 219 | 2.0E-62 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 234 | 362 | 3.0E-12 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 40 | 582 | 9.8E-176 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 1.6300000000449E-314 |
| RefSeq | XP_004958794.1 | pyruvate decarboxylase 2 [Setaria italica] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | K4A1P9 | pyruvate decarboxylase OS=Setaria italica OX=4555 GN=101785721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology