Basic Information
Locus ID:
AH03.4141
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 54884213 | 54888578 | + | AH03.4141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 117,301.21 Da | 37.91 | 83.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01490 | Ube1_repeat2 | 471 | 1010 | 0.0 | - |
| CDD | cd01491 | Ube1_repeat1 | 54 | 439 | 3.19296E-152 | - |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 229 | 299 | 1.6E-26 | IPR032418 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 301 | 370 | 4.0E-22 | IPR032420 |
| Pfam | PF00899 | ThiF family | 452 | 951 | 5.5E-72 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 639 | 892 | 3.0E-83 | IPR019572 |
| Pfam | PF00899 | ThiF family | 56 | 431 | 1.9E-27 | IPR000594 |
| Pfam | PF09358 | Ubiquitin fold domain | 963 | 1052 | 1.8E-22 | IPR018965 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 447 | 947 | 7.85E-128 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 48 | 437 | 2.88E-98 | IPR035985 |
| Gene3D | G3DSA:1.10.10.2660 | - | 624 | 899 | 1.8E-191 | IPR042063 |
| Gene3D | G3DSA:3.40.50.12550 | - | 174 | 462 | 2.1E-111 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 472 | 951 | 1.8E-191 | - |
| Gene3D | G3DSA:3.10.290.60 | - | 965 | 1055 | 4.7E-21 | IPR038252 |
| Gene3D | G3DSA:2.40.30.180 | - | 217 | 298 | 2.1E-111 | IPR042302 |
| Gene3D | G3DSA:3.50.50.80 | - | 46 | 163 | 8.4E-36 | IPR042449 |
| SMART | SM00985 | UBA_e1_C_a_2 | 930 | 1052 | 5.3E-44 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 49 | 1057 | 0.0 | IPR018075 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 631 | 639 | - | IPR033127 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 414 | 422 | - | IPR018074 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 546 | 571 | 4.2E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 191 | 218 | 4.2E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 700 | 727 | 4.2E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 499 | 522 | 4.2E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 76 | 100 | 4.2E-64 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30110.1 | ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. | 0 |
| RefSeq | XP_025802919.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Panicum hallii] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6TCZ7 | E1 ubiquitin-activating enzyme OS=Panicum miliaceum OX=4540 GN=C2845_PM03G17100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology