Basic Information
Locus ID:
AH03.413
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 4668762 | 4678731 | - | AH03.413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 142,549.03 Da | 52.07 | 81.61 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17921 | Integrase zinc binding domain | 26 | 75 | 1.8E-13 | IPR041588 |
| Pfam | PF00665 | Integrase core domain | 98 | 189 | 2.1E-8 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 86 | 248 | 1.82E-42 | IPR012337 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 357 | 430 | 3.81E-11 | IPR016197 |
| Gene3D | G3DSA:3.30.420.10 | - | 84 | 288 | 5.5E-51 | IPR036397 |
| Gene3D | G3DSA:1.10.340.70 | - | 8 | 74 | 6.8E-9 | - |
| Gene3D | G3DSA:2.40.50.40 | - | 391 | 438 | 3.5E-7 | - |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 391 | 434 | 11.869701 | IPR000953 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 84 | 248 | 20.619942 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 683 | - | - |
| Coils | Coil | Coil | 871 | 898 | - | - |
| Coils | Coil | Coil | 1214 | 1234 | - | - |
| Coils | Coil | Coil | 1155 | 1175 | - | - |
| Coils | Coil | Coil | 748 | 768 | - | - |
| Coils | Coil | Coil | 839 | 863 | - | - |
| Coils | Coil | Coil | 776 | 828 | - | - |
| Coils | Coil | Coil | 685 | 722 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035814684.1 | riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Zea mays] | 1.38E-208 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 3.44E-45 | |
| TrEMBL | A0A3L6R3C9 | Integrase catalytic domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM08G26300 PE=4 SV=1 | 9.0E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.413, BH03.502, CH03.588 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G056800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr28G002050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4822 |