Basic Information
Locus ID:
AH03.4079
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 54301783 | 54309492 | + | AH03.4079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 99,532.51 Da | 43.12 | 84.66 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 10 | 201 | 1.16137E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 202 | 337 | 3.74826E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 220 | 327 | 6.9E-20 | IPR001650 |
| Pfam | PF14493 | Helix-turn-helix domain | 669 | 765 | 5.1E-16 | IPR029491 |
| Pfam | PF09382 | RQC domain | 406 | 505 | 1.6E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 21 | 180 | 8.1E-21 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 553 | 616 | 1.0E-10 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 340 | 401 | 4.5E-11 | IPR032284 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 399 | 502 | 1.5E-23 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 26 | 339 | 2.67E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 546 | 629 | 4.36E-15 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 545 | 633 | 5.4E-14 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 202 | 403 | 4.0E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 404 | 528 | 4.6E-34 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 5 | 200 | 7.5E-72 | IPR027417 |
| SMART | SM00490 | helicmild6 | 247 | 328 | 3.9E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 548 | 628 | 7.2E-5 | IPR002121 |
| SMART | SM00487 | ultradead3 | 15 | 210 | 1.4E-32 | IPR014001 |
| SMART | SM00956 | RQC_2 | 408 | 512 | 6.4E-21 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 10 | 460 | 1.3E-152 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 548 | 628 | 16.109863 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 27 | 194 | 24.071005 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 218 | 369 | 18.729919 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 849 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 5.21E-89 |
| RefSeq | XP_034581483.1 | probable ATP-dependent DNA helicase RecQ [Setaria viridis] | 0 |
| P15043 | ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 | 2.3E-116 | |
| TrEMBL | A0A4U6WFB6 | ATP-dependent DNA helicase OS=Setaria viridis OX=4556 GN=SEVIR_2G447500v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology