Basic Information
Locus ID:
AH03.4043
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 53892518 | 53894673 | + | AH03.4043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.23 | 20,971.49 Da | 40.25 | 83.96 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 187 | 4.5E-95 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 139 | 3.01E-26 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 187 | 3.0E-100 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 50 | 67 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 187 | - | - |
| Coils | Coil | Coil | 187 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 2.22E-109 |
| RefSeq | NP_001131538.1 | 60S ribosomal protein L18-3 [Zea mays] | 6.53E-126 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 2.13E-108 | |
| TrEMBL | A0A3L6T8R6 | Ribosomal_L18e/L15P domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G16110 PE=3 SV=1 | 6.27E-126 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology