Basic Information
Locus ID:
AH03.3979
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Tryptophan/tyrosine permease family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 53407093 | 53414139 | - | AH03.3979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 81,650.38 Da | 47.47 | 100.46 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03222 | Tryptophan/tyrosine permease family | 378 | 745 | 1.5E-66 | IPR018227 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 377 | 748 | 1.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19500.1 | Tryptophan/tyrosine permease. | 2.13E-187 |
| RefSeq | XP_034582379.1 | tyrosine-specific transport protein-like isoform X1 [Setaria viridis] | 2.03E-279 |
| P0AAD4 | Tyrosine-specific transport system OS=Escherichia coli (strain K12) OX=83333 GN=tyrP PE=1 SV=1 | 8.11E-36 | |
| TrEMBL | A0A4V6DCC3 | Tryptophan/tyrosine permease OS=Setaria viridis OX=4556 GN=SEVIR_2G434100v2 PE=4 SV=1 | 4.59E-278 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg8491, jg9804 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10162 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005120, Ah005122 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074330 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17367, Sbi_jg17368, Sbi_jg62017 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg632 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015523 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24307, Sgl29483, Sgl29514 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009335, gene:ENSEOMG00000028739 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002670, CQ.Regalona.r1.4BG0002790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171190 |
| Apiaceae | Apium graveolens | 2 | Ag2G00700, Ag5G02887 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720558, gene-LOC120108598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3262.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G10270, Ftri17G13260 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013310m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g044240.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0622, Ceq05G1687 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G0635, Cgl05G1681, Cgl05G1682, Cgl05G1685 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04520 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g26790, gene.Thate08g20990 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1022, evm.TU.LG09.43, evm.TU.LG10.231 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041521 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15861, Lb6G30453 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.4314, AH03.3979, BH01.4620, BH01.4659, BH03.4298 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0241420, gene-QOZ80_3BG0286670 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0115940.1, HORVU.MOREX.r3.4HG0391170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039024, gene-QYE76_069249 |
| Poaceae | Oryza coarctata | 3 | Oco05G008450, Oco06G008750, Oco14G015890 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g14910.1, LOC_Os03g14915.1, LOC_Os07g46780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G415100, gene-BS78_02G380400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102074, Pt_Chr0102095, Pt_Chr0305112 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G029780, Chr0G021040, Chr0G021410, Chr12G009740 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G261300, Tel4E01G384900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG015250, gene_TRIDC2BG018350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G123900.1, TraesCS2B02G145800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb329970_P003 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-161, nbis-gene-2226, nbis-gene-2227 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1620, Zma_g7022 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1648, evm.TU.LG20.233 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g09600, gene.Posoc01g09610, gene.Posoc06g00050 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.444, evm.TU.Scaffold_4_RagTag.1623 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24304, nbisL1-mrna-26116 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12934, nbisL1-mrna-20426 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19706, nbisL1-mrna-4445 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.893, evm.TU.utg000027l.299 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001208, Maker00017937 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2158, nbisL1-mrna-5687 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11928, nbisL1-mrna-20662, nbisL1-mrna-9546 |
| Salicaceae | Populus euphratica | 3 | populus_peu06282, populus_peu11999, populus_peu20113 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600764 |
| Solanaceae | Solanum chilense | 1 | SOLCI000378500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002921, gene-LOC107017875 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4728 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2959 |
| Zosteraceae | Zostera marina | 2 | Zosma02g24420.v3.1, Zosma05g22350.v3.1 |