Basic Information
Locus ID:
AH03.3960
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 53266822 | 53269384 | + | AH03.3960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 41,109.86 Da | 35.68 | 80.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 102 | 140 | 1.29902E-14 | - |
| CDD | cd03829 | Sina | 218 | 357 | 4.15762E-61 | - |
| Pfam | PF03145 | Seven in absentia protein family | 146 | 356 | 7.1E-77 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 145 | 7.39E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 157 | 360 | 3.53E-41 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 158 | 5.2E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 227 | 356 | 1.1E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 212 | 8.9E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 104 | 140 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 157 | 217 | 13.989262 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 4.17E-162 |
| RefSeq | XP_039797103.1 | E3 ubiquitin-protein ligase DIS1-like isoform X2 [Panicum virgatum] | 5.59E-233 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 1.56E-210 | |
| TrEMBL | A0A8T0VWK7 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG620500 PE=3 SV=1 | 1.31E-229 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology