Basic Information
Locus ID:
AH03.3949
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 53157900 | 53165967 | + | AH03.3949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 95,600.39 Da | 54.12 | 79.08 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 32 | 131 | 1.60374E-12 | - |
| CDD | cd00159 | RhoGAP | 192 | 329 | 2.2908E-31 | - |
| Pfam | PF00620 | RhoGAP domain | 192 | 336 | 9.1E-30 | IPR000198 |
| Pfam | PF00169 | PH domain | 31 | 135 | 1.9E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 619 | 699 | 4.2E-22 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 192 | 386 | 8.83E-32 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 25 | 143 | 5.21E-18 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 162 | 385 | 4.3E-40 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 19 | 137 | 1.1E-17 | IPR011993 |
| SMART | SM00233 | PH_update | 30 | 138 | 6.1E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 189 | 380 | 5.2E-24 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 183 | 383 | 29.094301 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 29 | 136 | 15.5715 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 794 | - | - |
| Coils | Coil | Coil | 668 | 702 | - | - |
| Coils | Coil | Coil | 822 | 842 | - | - |
| Coils | Coil | Coil | 609 | 643 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_004958566.1 | rho GTPase-activating protein 7 isoform X4 [Setaria italica] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | K3ZQL8 | Rho GTPase-activating protein 7-like OS=Setaria italica OX=4555 GN=101765349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology