Basic Information
Locus ID:
AH03.3936
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 53071394 | 53076700 | - | AH03.3936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 78,663.10 Da | 46.59 | 77.54 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 52 | 206 | 9.18808E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 211 | 335 | 3.5E-54 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 338 | 397 | 1.3E-15 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 211 | 4.0E-32 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 138 | 7.1E-9 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 335 | 5.23E-48 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 12 | 205 | 6.07E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 336 | 462 | 2.55E-35 | IPR011068 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 337 | 452 | 1.5E-29 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 174 | 335 | 7.4E-62 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 46 | 169 | 5.8E-7 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 627 | 4.7E-189 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 1.59E-230 |
| RefSeq | XP_025800996.1 | nuclear poly(A) polymerase 1-like isoform X1 [Panicum hallii] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 1.53E-229 | |
| TrEMBL | A0A2S3H4J9 | polynucleotide adenylyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_2G473200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology