Basic Information
Locus ID:
AH03.377
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 4205418 | 4210356 | + | AH03.377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 112,086.16 Da | 50.47 | 89.17 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 26 | 68 | 6.4E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 169 | 333 | 3.45E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 91 | 7.85E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 163 | 337 | 6.0E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 66 | 7.1E-7 | - |
| SMART | SM00256 | fbox_2 | 29 | 69 | 0.01 | IPR001810 |
| SMART | SM00256 | fbox_2 | 580 | 621 | 52.0 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 82 | 10.477762 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52460.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 2.26E-6 |
| RefSeq | XP_039798310.1 | uncharacterized protein LOC120663526 isoform X1 [Panicum virgatum] | 7.28E-196 |
| TrEMBL | A0A835EU25 | DUF295 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_028260 PE=4 SV=1 | 3.3E-227 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.377, BH03.456, CH03.533 |
| Poaceae | Oryza coarctata | 2 | Oco13G009720, Oco14G010320 |
| Poaceae | Oryza sativa | 3 | LOC_Os07g36790.1, LOC_Os07g36890.1, LOC_Os07g36900.1 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048940, gene_TRIDC2BG051540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327500.1, TraesCS2B02G354500.1 ... |