Basic Information
Locus ID:
AH03.3762
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 51840858 | 51841925 | + | AH03.3762 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 38,466.96 Da | 36.17 | 64.37 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 196 | 257 | 1.4E-12 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 305 | 351 | 3.2E-23 | IPR016072 |
| SUPERFAMILY | SSF54695 | POZ domain | 197 | 259 | 1.26E-10 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 275 | 350 | 5.62E-23 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 195 | 353 | 3.7E-50 | IPR011333 |
| SMART | SM00512 | skp1_3 | 195 | 303 | 4.2E-16 | IPR001232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 79 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 2.24E-38 |
| RefSeq | XP_022680105.1 | SKP1-like protein 11 [Setaria italica] | 2.8E-81 |
| Q651E8 | SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1 | 1.45E-38 | |
| TrEMBL | A0A4U6W2S7 | SKP1-like protein OS=Setaria viridis OX=4556 GN=SEVIR_2G407900v2 PE=3 SV=1 | 1.86E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.3762, BH03.4041, CH03.4310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G357300 |