Basic Information
Locus ID:
AH03.3706
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 51405322 | 51406101 | - | AH03.3706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 27,139.66 Da | 60.46 | 70.89 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 92 | 135 | 3.00286E-17 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 135 | 3.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 143 | 7.54E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 139 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 93 | 134 | 4.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 135 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 259 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 4.1E-20 |
| RefSeq | XP_039796763.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 1.69E-142 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 6.54E-23 | |
| TrEMBL | A0A1E5WN55 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000160 PE=4 SV=1 | 6.88E-150 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology