Basic Information
Locus ID:
AH03.3516
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 49866777 | 49886125 | + | AH03.3516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 256,223.45 Da | 54.34 | 78.85 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12327 | RRM2_DAZAP1 | 937 | 1016 | 1.20155E-46 | IPR034131 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 854 | 906 | 4.6E-9 | IPR000504 |
| Pfam | PF03000 | NPH3 family | 395 | 644 | 1.9E-56 | IPR027356 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 941 | 1007 | 6.6E-16 | IPR000504 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 2017 | 2054 | 2.9E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 2099 | 2137 | 1.6E-6 | IPR000225 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 854 | 938 | 1.63E-17 | IPR035979 |
| SUPERFAMILY | SSF54695 | POZ domain | 217 | 313 | 5.73E-10 | IPR011333 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1982 | 2259 | 1.36E-44 | IPR016024 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 938 | 1026 | 5.02E-26 | IPR035979 |
| Gene3D | G3DSA:1.25.10.10 | - | 2126 | 2266 | 2.8E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 213 | 324 | 2.2E-9 | IPR011333 |
| Gene3D | G3DSA:3.30.70.330 | - | 936 | 1022 | 4.4E-27 | IPR012677 |
| Gene3D | G3DSA:1.25.10.10 | - | 1985 | 2125 | 7.6E-29 | IPR011989 |
| Gene3D | G3DSA:3.30.70.330 | - | 846 | 921 | 8.7E-18 | IPR012677 |
| SMART | SM00185 | arm_5 | 2221 | 2261 | 5.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 2138 | 2178 | 190.0 | IPR000225 |
| SMART | SM00360 | rrm1_1 | 940 | 1012 | 2.8E-25 | IPR000504 |
| SMART | SM00185 | arm_5 | 2179 | 2219 | 0.45 | IPR000225 |
| SMART | SM00360 | rrm1_1 | 846 | 911 | 9.2E-9 | IPR000504 |
| SMART | SM00185 | arm_5 | 2015 | 2055 | 0.0015 | IPR000225 |
| SMART | SM00185 | arm_5 | 2056 | 2096 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 2097 | 2137 | 0.012 | IPR000225 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 939 | 1016 | 17.88162 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 854 | 915 | 12.98672 | IPR000504 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 395 | 668 | 62.403316 | IPR027356 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 2026 | 2068 | 13.3174 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 935 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1781 | 1802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1475 | 1579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1483 | 1502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1676 | 1724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1817 | 1840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1503 | 1524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 933 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1775 | 1802 | - | - |
| Coils | Coil | Coil | 738 | 765 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48130.1 | Phototropic-responsive NPH3 family protein. | 7.18E-131 |
| RefSeq | XP_004958147.1 | BTB/POZ domain-containing protein At5g48130 [Setaria italica] | 0 |
| Q9LUB9 | BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana OX=3702 GN=At5g48130 PE=2 SV=1 | 6.93E-130 | |
| TrEMBL | K3ZR96 | NPH3 domain-containing protein OS=Setaria italica OX=4555 GN=101769422 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37427 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20670 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015443 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25331, Sbi_jg9180 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42926, Sgl47718 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010240, gene:ENSEOMG00000034795 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0014080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017380 |
| Apiaceae | Apium graveolens | 1 | Ag2G00565 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713374 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2701.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G18325 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48130.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2291 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2382 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9813 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2215 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031835 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14654 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3516, BH03.3731, CH03.3947 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574760, gene-QOZ80_7BG0606150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0130630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040042 |
| Poaceae | Oryza coarctata | 2 | Oco13G011170, Oco14G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G330800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304655 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003350, Chr24G011260, Chr27G013870, Chr28G010450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G361800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024370, gene_TRIDC2BG028760 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G190500.2, TraesCS2B02G216500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb325790_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32781, nbis-gene-561 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5446, Zma_g6730 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1143, evm.TU.LG20.1411 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20575, nbisL1-mrna-20589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14374 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.895 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13888 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4644 |
| Salicaceae | Populus euphratica | 1 | populus_peu26926 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642346 |
| Solanaceae | Solanum chilense | 1 | SOLCI001406400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024647 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2204 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0192 |