Basic Information
Locus ID:
AH03.3500
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 49669066 | 49670356 | - | AH03.3500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 38,253.58 Da | 42.22 | 97.79 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 87 | 360 | 4.17797E-73 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 89 | 335 | 2.1E-55 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 63 | 344 | 1.8E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 58 | 362 | 2.1E-111 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 139 | 155 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 280 | 292 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 65 | 360 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 65 | 360 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 3.13E-136 |
| RefSeq | XP_004958131.1 | geranylgeranyl pyrophosphate synthase 7, chloroplastic [Setaria italica] | 2.41E-212 |
| Q94ID7 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1 | 5.77E-140 | |
| TrEMBL | A0A1E5VQB9 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011665 PE=3 SV=1 | 3.43E-215 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology