Basic Information
Locus ID:
AH03.3478
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 49516340 | 49524066 | + | AH03.3478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 93,742.04 Da | 46.41 | 76.87 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 735 | 870 | 1.51316E-52 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 737 | 868 | 1.6E-37 | IPR000608 |
| Pfam | PF07983 | X8 domain | 562 | 633 | 6.4E-17 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 224 | 545 | 3.5E-71 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 224 | 545 | 1.83E-74 | IPR017853 |
| SUPERFAMILY | SSF54495 | UBC-like | 719 | 874 | 1.51E-49 | IPR016135 |
| Gene3D | G3DSA:1.20.58.1040 | - | 558 | 651 | 7.4E-9 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 724 | 875 | 3.0E-52 | IPR016135 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 223 | 551 | 4.7E-108 | - |
| SMART | SM00212 | ubc_7 | 735 | 875 | 3.7E-53 | - |
| SMART | SM00768 | X8_cls | 561 | 646 | 4.4E-42 | IPR012946 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 732 | 875 | 44.922791 | IPR000608 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 1.3E-172 |
| RefSeq | XP_012698805.2 | glucan endo-1,3-beta-glucosidase 4 [Setaria italica] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 1.25E-171 | |
| TrEMBL | A0A1E5VC64 | Glucan endo-1,3-beta-glucosidase 4 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016242 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology