HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: AH03.3309
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
Chromosome Start End Strand ID
AH03 47930313 47932799 + AH03.3309
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.68 53,195.57 Da 63.04 100.38 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 18 56 3.5E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 9 64 7.85E-8 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G56400.1 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. 1.7E-6
RefSeq XP_039793005.1 F-box/FBD/LRR-repeat protein At1g16930-like [Panicum virgatum] 1.44E-276
TrEMBL A0A8T0VL75 F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG540000 PE=4 SV=1 3.25E-275
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda glauca 1 Sgl52245
Dunaliellaceae Dunaliella salina 1 Dusal.0175s00007.v1.0
Poaceae Echinochloa crus-galli 38 AH01.2194, AH03.3309, AH03.3310, AH03.92, AH03.93, AH03.95 ...
AH03.97, AH04.1753, AH04.1754, AH07.1987, AH07.412, BH03.149, BH03.3474, BH03.3493, BH04.1755, BH04.1757, BH05.3281, BH05.3394, BH05.3991, BH07.529, BH07.537, CH02.3867, CH03.150, CH03.151, CH03.211, CH03.3694, CH03.3695, CH03.3705, CH03.3706, CH03.53, CH05.3376, CH05.3385, CH05.3387, CH05.3388, Contig1297.2, Contig1297.4, Contig1297.5, Contig1297.7
Poaceae Eleusine coracana subsp. coracana 33 gene-QOZ80_2AG0111000, gene-QOZ80_2AG0111010 ...
gene-QOZ80_2BG0164450, gene-QOZ80_4BG0348370, gene-QOZ80_5AG0367070, gene-QOZ80_5AG0387690, gene-QOZ80_5BG0415190, gene-QOZ80_5BG0454240, gene-QOZ80_5BG0454250, gene-QOZ80_7AG0553160, gene-QOZ80_7AG0553170, gene-QOZ80_7AG0553180, gene-QOZ80_7AG0553190, gene-QOZ80_7AG0553200, gene-QOZ80_7AG0553230, gene-QOZ80_7AG0553240, gene-QOZ80_7AG0553250, gene-QOZ80_7AG0555680, gene-QOZ80_7AG0559090, gene-QOZ80_7AG0571290, gene-QOZ80_7AG0571560, gene-QOZ80_7BG0584270, gene-QOZ80_7BG0584290, gene-QOZ80_7BG0586650, gene-QOZ80_7BG0590350, gene-QOZ80_7BG0602720, gene-QOZ80_7BG0603220, gene-QOZ80_7BG0603240, gene-QOZ80_7BG0603300, gene-QOZ80_7BG0603320, gene-QOZ80_9AG0684190, gene-QOZ80_9BG0710270, gene-QOZ80_UnG0726170
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.1HG0018810.1, HORVU.MOREX.r3.2HG0155620.1 ...
HORVU.MOREX.r3.2HG0155680.1, HORVU.MOREX.r3.2HG0156270.1, HORVU.MOREX.r3.2HG0193230.1, HORVU.MOREX.r3.3HG0239610.1.CDS1, HORVU.MOREX.r3.4HG0395620.1.CDS1
Poaceae Lolium multiflorum 43 gene-QYE76_009425, gene-QYE76_009426, gene-QYE76_009517 ...
gene-QYE76_009518, gene-QYE76_009534, gene-QYE76_009536, gene-QYE76_009541, gene-QYE76_009544, gene-QYE76_009829, gene-QYE76_009853, gene-QYE76_010033, gene-QYE76_010968, gene-QYE76_010969, gene-QYE76_010972, gene-QYE76_013861, gene-QYE76_016365, gene-QYE76_016544, gene-QYE76_027139, gene-QYE76_030511, gene-QYE76_030519, gene-QYE76_039830, gene-QYE76_040676, gene-QYE76_043209, gene-QYE76_046139, gene-QYE76_049207, gene-QYE76_049873, gene-QYE76_050043, gene-QYE76_050284, gene-QYE76_050292, gene-QYE76_050294, gene-QYE76_050835, gene-QYE76_056879, gene-QYE76_057719, gene-QYE76_059966, gene-QYE76_064716, gene-QYE76_068849, gene-QYE76_068850, gene-QYE76_068852, gene-QYE76_068879, gene-QYE76_069011, gene-QYE76_071942, gene-QYE76_071955, gene-QYE76_071956
Poaceae Oryza coarctata 17 Oco01G011170, Oco02G010020, Oco05G025270, Oco12G006760 ...
Oco13G001270, Oco13G009520, Oco14G000530, Oco14G001340, Oco14G001350, Oco14G001390, Oco14G004550, Oco14G004690, Oco14G005510, Oco14G010090, Oco14G010100, Oco14G010120, Oco14G010190
Poaceae Oryza sativa 17 LOC_Os07g02290.1, LOC_Os07g02760.1, LOC_Os07g02770.1 ...
LOC_Os07g04980.1, LOC_Os07g12540.1, LOC_Os07g12560.1, LOC_Os07g12590.2, LOC_Os07g12600.1, LOC_Os07g12610.1, LOC_Os07g36320.1, LOC_Os07g36330.1, LOC_Os07g36340.1, LOC_Os07g36360.1, LOC_Os07g36370.1, LOC_Os07g36400.1, LOC_Os07g36520.1, LOC_Os07g36530.1
Poaceae Paspalum vaginatum 19 gene-BS78_01G085500, gene-BS78_01G128700 ...
gene-BS78_02G012100, gene-BS78_02G012600, gene-BS78_02G013000, gene-BS78_02G013100, gene-BS78_02G063900, gene-BS78_02G309000, gene-BS78_03G168100, gene-BS78_04G025300, gene-BS78_04G025600, gene-BS78_05G063000, gene-BS78_05G177100, gene-BS78_05G177300, gene-BS78_05G177400, gene-BS78_06G155700, gene-BS78_09G039500, gene-BS78_10G233600, gene-BS78_10G233800
Poaceae Puccinellia tenuiflora 31 Pt_Chr0200116, Pt_Chr0200117, Pt_Chr0200122, Pt_Chr0202128 ...
Pt_Chr0202173, Pt_Chr0300431, Pt_Chr0303353, Pt_Chr0303382, Pt_Chr0306501, Pt_Chr0307488, Pt_Chr0500492, Pt_Chr0500495, Pt_Chr0500496, Pt_Chr0500498, Pt_Chr0500499, Pt_Chr0500505, Pt_Chr0500509, Pt_Chr0500554, Pt_Chr0500556, Pt_Chr0501507, Pt_Chr0501622, Pt_Chr0501685, Pt_Chr0501735, Pt_Chr0600005, Pt_Chr0600006, Pt_Chr0600018, Pt_Chr0600019, Pt_Chr0600020, Pt_Chr0605107, Pt_Chr0605108, Pt_Chr0605118
Poaceae Sporobolus alterniflorus 8 Chr07G015770, Chr17G004770, Chr19G018670, Chr24G002210 ...
Chr27G001110, Chr27G012420, Chr28G000460, Chr28G008980
Poaceae Thinopyrum elongatum 12 Tel1E01G164700, Tel1E01G194100, Tel1E01G194300 ...
Tel2E01G172600, Tel2E01G474100, Tel2E01G474300, Tel2E01G475800, Tel3E01G151500, Tel3E01G206300, Tel4E01G552700, Tel6E01G181700, Tel7E01G875400
Poaceae Triticum dicoccoides 16 gene_TRIDC1BG014730, gene_TRIDC2AG037320 ...
gene_TRIDC2AG037600, gene_TRIDC2AG037630, gene_TRIDC2AG047080, gene_TRIDC2BG040300, gene_TRIDC2BG040320, gene_TRIDC2BG040520, gene_TRIDC6AG009650, gene_TRIDC7AG066130, gene_TRIDC7AG071420, gene_TRIDC7BG008080, gene_TRIDC7BG059650, gene_TRIDC7BG066540, gene_TRIDC7BG066590, gene_TRIDC7BG066710
Poaceae Triticum aestivum 35 TraesCS1A02G083900.1.cds1, TraesCS1A02G110700.1 ...
TraesCS1A02G436900.1.cds1, TraesCS1A02G437000.1, TraesCS1B02G101200.1, TraesCS2A02G079100.1, TraesCS2A02G263100.1, TraesCS2A02G264200.3, TraesCS2A02G264400.1, TraesCS2A02G342400.1, TraesCS2A02G435800.1, TraesCS2B02G093900.1, TraesCS2B02G277700.1, TraesCS2B02G277900.1, TraesCS2B02G339900.1, TraesCS2B02G457400.1, TraesCS2D02G259500.1, TraesCS2D02G259700.2, TraesCS2D02G260900.1, TraesCS2D02G434100.1, TraesCS3A02G119900.1.cds1, TraesCS3B02G100300.1, TraesCS3B02G139300.1, TraesCS3D02G085200.1, TraesCS3D02G122000.1, TraesCS6A02G078500.1, TraesCS6A02G085500.1, TraesCS6B02G268400.1, TraesCS7A02G473800.1, TraesCS7A02G509700.1, TraesCS7B02G375100.1, TraesCS7B02G419600.1, TraesCS7B02G420000.1, TraesCS7D02G348800.1.cds1, TraesCS7D02G499100.1
Poaceae Zea mays 3 Zm00001eb116530_P002, Zm00001eb162720_P001 ...
Zm00001eb168800_P001
Poaceae Zoysia japonica 6 nbis-gene-35863, nbis-gene-35864, nbis-gene-35865 ...
nbis-gene-50425, nbis-gene-56969, nbis-gene-57498
Poaceae Zoysia macrostachya 2 Zma_g4686, Zma_g6614
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-19424
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.