Basic Information
Locus ID:
AH03.3295
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 47822400 | 47824204 | - | AH03.3295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 52,574.76 Da | 43.21 | 101.81 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 62 | 7.5E-5 | IPR001810 |
| Pfam | PF08387 | FBD | 403 | 439 | 7.8E-6 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 62 | 7.33E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 137 | 282 | 2.28E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 62 | 3.8E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 468 | 2.3E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 70 | 9.047065 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03220.1 | Protein with RNI-like/FBD-like domains. | 3.1E-11 |
| RefSeq | XP_002462983.2 | putative F-box/FBD/LRR-repeat protein At4g03220 [Sorghum bicolor] | 7.91E-159 |
| Q9ZR09 | Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana OX=3702 GN=At4g03220 PE=4 SV=1 | 3.08E-10 | |
| TrEMBL | A0A4V6DBS8 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G355400v2 PE=4 SV=1 | 4.57E-222 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.3295 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_7AG0571210, gene-QOZ80_7AG0571240 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040714, gene-QYE76_040716 |
| Poaceae | Oryza coarctata | 2 | Oco13G009510, Oco14G010080 |
| Poaceae | Oryza sativa | 4 | LOC_Os07g36280.1, LOC_Os07g36290.1, LOC_Os07g36300.1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G004900, Chr24G009450, Chr24G009460, Chr24G009470 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-769 |