Basic Information
Locus ID:
AH03.3094
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 45955078 | 45956380 | + | AH03.3094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 37,358.16 Da | 53.01 | 93.22 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13833 | EF-hand domain pair | 190 | 233 | 0.0096 | IPR002048 |
| Pfam | PF00036 | EF hand | 255 | 281 | 3.1E-6 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 77 | 116 | 2.8E-10 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 76 | 118 | 5.4E-14 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 163 | 304 | 3.13E-25 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 60 | 152 | 2.0E-13 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 153 | 308 | 2.8E-26 | - |
| SMART | SM00054 | efh_1 | 211 | 239 | 0.65 | IPR002048 |
| SMART | SM00054 | efh_1 | 254 | 282 | 3.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 174 | 202 | 3.8 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 240 | 9.573678 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 174 | 205 | 9.715397 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 250 | 285 | 15.127104 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 207 | 242 | 10.384886 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 220 | 232 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 90 | 102 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 263 | 275 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 3.22E-28 |
| RefSeq | XP_022682297.1 | probable calcium-binding protein CML14 [Setaria italica] | 4.12E-59 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 1.78E-41 | |
| TrEMBL | K3XLL5 | Calcium-binding protein CML15 OS=Setaria italica OX=4555 GN=SETIT_5G217800v2 PE=4 SV=1 | 1.4E-58 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology