HalophFGD

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Basic Information
Locus ID: AH03.3016
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
AH03 45282232 45283638 - AH03.3016
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.68 42,593.79 Da 52.72 99.64 0.11
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 19 79 2.35E-8 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G51530.1 F-box/RNI-like/FBD-like domains-containing protein. 5.53E-11
RefSeq XP_015619284.2 uncharacterized protein LOC107277834 [Oryza sativa Japonica Group] 9.39E-140
Swiss-Prot Q501E9 F-box/FBD/LRR-repeat protein At3g51530 OS=Arabidopsis thaliana OX=3702 GN=At3g51530 PE=2 SV=1 5.49E-10
TrEMBL A0A368RJT4 F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G092600v2 PE=4 SV=1 2.62E-166
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 17 AH03.2980, AH03.3016, AH03.3734, BH03.3179, BH03.3186 ...
BH03.4012, BH03.4013, BH03.4260, CH02.1632, CH03.3342, CH03.3348, CH03.3349, CH03.3358, CH03.3373, CH03.4281, CH07.236, CH07.241
Poaceae Eleusine coracana subsp. coracana 13 gene-QOZ80_1AG0040150, gene-QOZ80_5AG0362280 ...
gene-QOZ80_7AG0567200, gene-QOZ80_7AG0567380, gene-QOZ80_7AG0567490, gene-QOZ80_7AG0577600, gene-QOZ80_7BG0598680, gene-QOZ80_7BG0598840, gene-QOZ80_7BG0598930, gene-QOZ80_7BG0601540, gene-QOZ80_8AG0640840, gene-QOZ80_8AG0640850, gene-QOZ80_8BG0643680
Poaceae Hordeum vulgare 14 HORVU.MOREX.r3.1HG0084540.1, HORVU.MOREX.r3.2HG0195010.1 ...
HORVU.MOREX.r3.2HG0188030.1.CDS1, HORVU.MOREX.r3.4HG0395670.1, HORVU.MOREX.r3.4HG0415360.1, HORVU.MOREX.r3.4HG0418200.1, HORVU.MOREX.r3.6HG0632570.1, HORVU.MOREX.r3.7HG0731450.1, HORVU.MOREX.r3.7HG0737880.1, HORVU.MOREX.r3.7HG0745040.1.CDS1, HORVU.MOREX.r3.7HG0745200.1, HORVU.MOREX.r3.7HG0745250.1, HORVU.MOREX.r3.7HG0745320.1, HORVU.MOREX.r3.7HG0745500.1
Poaceae Lolium multiflorum 36 gene-QYE76_000424, gene-QYE76_001664, gene-QYE76_003032 ...
gene-QYE76_006384, gene-QYE76_006396, gene-QYE76_006472, gene-QYE76_006476, gene-QYE76_025646, gene-QYE76_026198, gene-QYE76_036283, gene-QYE76_036711, gene-QYE76_036712, gene-QYE76_036713, gene-QYE76_036716, gene-QYE76_036719, gene-QYE76_036720, gene-QYE76_041359, gene-QYE76_049657, gene-QYE76_059691, gene-QYE76_059693, gene-QYE76_060055, gene-QYE76_071578, gene-QYE76_071580, gene-QYE76_071595, gene-QYE76_071600, gene-QYE76_071606, gene-QYE76_071634, gene-QYE76_071635, gene-QYE76_071697, gene-QYE76_071698, gene-QYE76_071704, gene-QYE76_071731, gene-QYE76_071733, gene-QYE76_071734, gene-QYE76_071799, gene-QYE76_071861
Poaceae Oryza coarctata 1 Oco13G009530
Poaceae Oryza sativa 1 LOC_Os12g36000.1
Poaceae Paspalum vaginatum 4 gene-BS78_02G277100, gene-BS78_02G277800 ...
gene-BS78_02G277900, gene-BS78_06G208700
Poaceae Puccinellia tenuiflora 18 Pt_Chr0100991, Pt_Chr0100992, Pt_Chr0106729, Pt_Chr0106914 ...
Pt_Chr0106915, Pt_Chr0300155, Pt_Chr0303262, Pt_Chr0303312, Pt_Chr0306558, Pt_Chr0401318, Pt_Chr0401613, Pt_Chr0401615, Pt_Chr0401618, Pt_Chr0401619, Pt_Chr0401620, Pt_Chr0401621, Pt_Chr0404054, Pt_Chr0701494
Poaceae Sporobolus alterniflorus 4 Chr0G002260, Chr24G005000, Chr28G006610, Chr28G006620
Poaceae Thinopyrum elongatum 23 Tel2E01G573100, Tel2E01G761200, Tel2E01G785900 ...
Tel3E01G652100, Tel4E01G552600, Tel4E01G597600, Tel4E01G598200, Tel5E01G045400, Tel5E01G104300, Tel6E01G160800, Tel7E01G598300, Tel7E01G806500, Tel7E01G808300, Tel7E01G808800, Tel7E01G810100, Tel7E01G851100, Tel7E01G899500, Tel7E01G901500, Tel7E01G901700, Tel7E01G901900, Tel7E01G902000, Tel7E01G902100, Tel7E01G902900
Poaceae Triticum dicoccoides 18 gene_TRIDC2AG047970, gene_TRIDC2BG050460 ...
gene_TRIDC2BG071150, gene_TRIDC4BG060960, gene_TRIDC4BG060990, gene_TRIDC5AG075660, gene_TRIDC5AG075680, gene_TRIDC5BG008230, gene_TRIDC5BG078890, gene_TRIDC7AG072750, gene_TRIDC7AG072880, gene_TRIDC7AG072920, gene_TRIDC7BG041510, gene_TRIDC7BG060240, gene_TRIDC7BG060300, gene_TRIDC7BG068870, gene_TRIDC7BG068910, gene_TRIDC7BG069090
Poaceae Triticum aestivum 52 TraesCS2A02G333300.1, TraesCS2A02G465500.1 ...
TraesCS2B02G469900.1, TraesCS2B02G487000.1, TraesCS2B02G487100.1, TraesCS2D02G327500.1, TraesCS2D02G448100.1, TraesCS2D02G465900.2, TraesCS3A02G410300.1, TraesCS3A02G410400.1, TraesCS3B02G443700.1, TraesCS3D02G405000.1, TraesCS3D02G405100.1, TraesCS4B02G364600.1, TraesCS4B02G365200.1, TraesCS4B02G365300.1, TraesCS4B02G393800.1, TraesCS5A02G533800.3, TraesCS5B02G049300.1, TraesCS5D02G055200.1, TraesCS6A02G066700.1, TraesCS7A02G374600.1, TraesCS7A02G497700.1, TraesCS7A02G518600.1, TraesCS7A02G518700.1, TraesCS7A02G519100.1, TraesCS7A02G519300.1, TraesCS7A02G519400.1, TraesCS7A02G519900.1, TraesCS7B02G225700.1, TraesCS7B02G252800.1, TraesCS7B02G379200.1, TraesCS7B02G433600.1.cds1, TraesCS7B02G434600.1, TraesCS7B02G434900.1, TraesCS7B02G435200.1, TraesCS7B02G435400.1, TraesCS7B02G436000.1, TraesCS7B02G436300.1, TraesCS7D02G141800.1, TraesCS7D02G321600.1, TraesCS7D02G464500.1, TraesCS7D02G465100.1, TraesCS7D02G485000.1, TraesCS7D02G508300.1, TraesCS7D02G508500.1, TraesCS7D02G508600.1, TraesCS7D02G509000.1, TraesCS7D02G509600.1, TraesCSU02G117400.1, TraesCSU02G138500.1, TraesCSU02G139200.1
Poaceae Zea mays 1 Zm00001eb105050_P001
Poaceae Zoysia japonica 3 nbis-gene-1023, nbis-gene-32928, nbis-gene-32976
Poaceae Zoysia macrostachya 2 Zma_g5574, Zma_g6436
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