Basic Information
Locus ID:
AH03.287
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 3317286 | 3323774 | + | AH03.287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 134,823.20 Da | 43.15 | 103.29 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 704 | 943 | 3.58339E-58 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 175 | 373 | 4.3679E-52 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 966 | 1186 | 3.55611E-122 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 399 | 599 | 3.78594E-109 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 707 | 804 | 2.2E-9 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 985 | 1133 | 1.8E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 417 | 551 | 1.0E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 179 | 351 | 1.7E-18 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 174 | 377 | 1.96E-17 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 395 | 620 | 1.15E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 959 | 1199 | 1.55E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 703 | 949 | 2.09E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 951 | 1203 | 3.1E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 653 | 805 | 1.3E-17 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 806 | 949 | 9.8E-19 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 147 | 381 | 2.4E-25 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 382 | 631 | 2.4E-76 | IPR027417 |
| SMART | SM00382 | AAA_5 | 426 | 599 | 4.6E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 994 | 1179 | 2.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 191 | 350 | 19.782166 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 399 | 622 | 23.422806 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 806 | 931 | 12.106214 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 968 | 1202 | 17.700546 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 706 | 804 | 14.327048 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 524 | 538 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZMJ9 | ABC transporter C family member 3 OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology