Basic Information
Locus ID:
AH03.2557
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 40899421 | 40910859 | + | AH03.2557 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.98 | 97,325.89 Da | 46.16 | 73.20 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 21 | 66 | 1.90251E-9 | - |
| Pfam | PF13639 | Ring finger domain | 20 | 66 | 5.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 68 | 8.13E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 70 | 1.3E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 65 | 4.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 66 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 673 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47700.2 | - | 4.94E-20 |
| RefSeq | XP_034580958.1 | uncharacterized protein LOC117844338 [Setaria viridis] | 1.41E-25 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 6.47E-21 | |
| TrEMBL | A0A368Q3L6 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G270200v2 PE=4 SV=1 | 4.08E-28 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||