Basic Information
Locus ID:
AH03.2501
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 40436702 | 40437343 | - | AH03.2501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 22,708.40 Da | 45.34 | 65.31 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 165 | 202 | 2.15624E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 164 | 209 | 7.5E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 209 | 1.26E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 213 | 1.1E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 202 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 203 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 180 | 189 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 4.57E-20 |
| RefSeq | XP_025801629.1 | uncharacterized protein LOC112881152 [Panicum hallii] | 2.93E-77 |
| TrEMBL | K3ZX17 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G264300v2 PE=4 SV=1 | 4.24E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology