Basic Information
Locus ID:
AH03.2319
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 38568905 | 38571748 | + | AH03.2319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 55,044.89 Da | 53.01 | 80.06 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 219 | 362 | 2.6E-5 | IPR006527 |
| Pfam | PF00646 | F-box domain | 19 | 58 | 3.8E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 85 | 2.22E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 70 | 8.5E-10 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 4.8E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 112 | 307 | 1.5E-24 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 63 | 11.775988 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 466 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22730.1 | F-box and associated interaction domains-containing protein. | 1.14E-15 |
| RefSeq | XP_039834593.1 | putative F-box protein At3g17500 [Panicum virgatum] | 2.73E-165 |
| Q9LUI8 | Putative F-box/kelch-repeat protein At3g22730 OS=Arabidopsis thaliana OX=3702 GN=At3g22730 PE=4 SV=1 | 1.12E-14 | |
| TrEMBL | A0A1E5W6F8 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005952 PE=4 SV=1 | 1.39E-175 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology