Basic Information
Locus ID:
AH03.2251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 37851473 | 37852552 | - | AH03.2251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 38,376.84 Da | 73.72 | 78.58 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 199 | 4.4879E-17 | - |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 3.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 210 | 2.27E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 205 | 3.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 198 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 276 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 1.5E-26 |
| RefSeq | XP_025803749.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Panicum hallii] | 2.23E-188 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 2.32E-24 | |
| TrEMBL | A0A3L6TH76 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM03G00410 PE=4 SV=1 | 5.39E-192 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_03G007200, COCNU_05G005430, COCNU_13G003440 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696979, gene-LOC103718737, gene-LOC120103675 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1871.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16610 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.2251, BH03.2154 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538300, gene-QOZ80_6BG0491520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005854, gene-QYE76_005871 |
| Poaceae | Oryza coarctata | 2 | Oco17G007050, Oco18G007260 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g29370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G211000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701786, Pt_Chr0701822 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G008210, Chr13G009530, Chr14G015580, Chr21G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G397500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG038830, gene_TRIDC5BG040980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G248300.1.cds1, TraesCS5B02G246000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101200_P001, Zm00001eb315620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30479 |