halophFGD

Basic Information

Locus ID: AH03.2063

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH03	35990252	35998235	+	AH03.2063

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.88	99,789.13 Da	47.39	77.55	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00504	Chlorophyll A-B binding protein	17	144	1.2E-17	IPR022796
Pfam	PF05699	hAT family C-terminal dimerisation region	742	815	4.2E-12	IPR008906
Pfam	PF04937	Protein of unknown function (DUF 659)	414	502	1.9E-21	IPR007021
SUPERFAMILY	SSF53098	Ribonuclease H-like	438	818	9.1E-37	IPR012337
SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	19	173	5.36E-29	-
Gene3D	G3DSA:1.10.3460.10	Chlorophyll a/b binding protein domain	12	164	6.6E-34	IPR023329
MobiDBLite	mobidb-lite	consensus disorder prediction	229	243	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	229	285	-	-

Gene Ontology

Molecular Function:

GO:0046983 (protein dimerization activity)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G19150.1	photosystem I light harvesting complex gene 6. PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA,	2.3E-58
RefSeq	XP_039794381.1	uncharacterized protein LOC120660098 [Panicum virgatum]	8.91E-266
Swiss-Prot	Q8LCQ4	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1	2.22E-57
TrEMBL	A0A1D6EAZ0	HAT transposon superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d003693 PE=4 SV=1	2.82E-302

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	14	gene_10851, gene_14167, gene_14168, gene_15155, gene_17122 ... gene_17583, gene_18765, gene_2071, gene_22275, gene_2597, gene_4160, gene_4986, gene_6143, gene_9780
Amaranthaceae	Atriplex hortensis	25	Ah002252, Ah003102, Ah003265, Ah011709, Ah011710, Ah012031 ... Ah012032, Ah012033, Ah014075, Ah019824, Ah020269, Ah024500, Ah025392, Ah025393, Ah029179, Ah030078, Ah030079, Ah030080, Ah030826, Ah030828, Ah030980, Ah034209, Ah038043, Ah038044, Ah038045
Amaranthaceae	Beta vulgaris	2	BVRB_2g033720, BVRB_6g143860
Amaranthaceae	Salicornia bigelovii	63	Sbi_g64257, Sbi_jg10117, Sbi_jg10519, Sbi_jg10904, Sbi_jg534 ... Sbi_jg1310, Sbi_jg15823, Sbi_jg15824, Sbi_jg16668, Sbi_jg16774, Sbi_jg16905, Sbi_jg16906, Sbi_jg17088, Sbi_jg17089, Sbi_jg18553, Sbi_jg19581, Sbi_jg19582, Sbi_jg19971, Sbi_jg20340, Sbi_jg21352, Sbi_jg22402, Sbi_jg23228, Sbi_jg25564, Sbi_jg25674, Sbi_jg27468, Sbi_jg27589, Sbi_jg31248, Sbi_jg32881, Sbi_jg32898, Sbi_jg32902, Sbi_jg33252, Sbi_jg35988, Sbi_jg37758, Sbi_jg38358, Sbi_jg39211, Sbi_jg39213, Sbi_jg44095, Sbi_jg45949, Sbi_jg45950, Sbi_jg46292, Sbi_jg46293, Sbi_jg46381, Sbi_jg47485, Sbi_jg48158, Sbi_jg5002, Sbi_jg50139, Sbi_jg50148, Sbi_jg51198, Sbi_jg56846, Sbi_jg57875, Sbi_jg57894, Sbi_jg57895, Sbi_jg58042, Sbi_jg58934, Sbi_jg61030, Sbi_jg62752, Sbi_jg7343, Sbi_jg8456, Sbi_jg9391, Sbi_jg9727, Sbi_jg9728, Sbi_jg9729, Sbi_m1-g45161
Amaranthaceae	Salicornia europaea	10	Seu_jg11073, Seu_jg17843, Seu_jg23029, Seu_jg23030 ... Seu_jg25043, Seu_jg25511, Seu_jg27614, Seu_jg3698, Seu_jg4824, Seu_jg7713
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00009387, GOSA_00009623, GOSA_00016024, GOSA_00016679 ... GOSA_00016680, GOSA_00016681, GOSA_00016939, GOSA_00016940, GOSA_00023094, GOSA_00023326
Amaranthaceae	Suaeda glauca	41	Sgl00198, Sgl00208, Sgl05256, Sgl05269, Sgl07562, Sgl11386 ... Sgl12804, Sgl16228, Sgl16281, Sgl18054, Sgl21116, Sgl21437, Sgl22312, Sgl22313, Sgl23691, Sgl26472, Sgl26763, Sgl27553, Sgl27554, Sgl28888, Sgl32610, Sgl37900, Sgl44134, Sgl44602, Sgl49362, Sgl53441, Sgl53492, Sgl56067, Sgl58703, Sgl58754, Sgl61400, Sgl65350, Sgl65363, Sgl69736, Sgl70064, Sgl71307, Sgl72470, Sgl73344, Sgl74902, Sgl76021, Sgl80917
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000007437, gene:ENSEOMG00000015609 ... gene:ENSEOMG00000036554, gene:ENSEOMG00000041648
Amaranthaceae	Chenopodium quinoa	41	CQ.Regalona.r1.1AG0012180, CQ.Regalona.r1.1AG0014370 ... CQ.Regalona.r1.1AG0018980, CQ.Regalona.r1.1AG0019740, CQ.Regalona.r1.1BG0005050, CQ.Regalona.r1.2AG0011990, CQ.Regalona.r1.2AG0012690, CQ.Regalona.r1.2BG0001940, CQ.Regalona.r1.3AG0009290, CQ.Regalona.r1.3AG0014160, CQ.Regalona.r1.3AG0014170, CQ.Regalona.r1.3AG0019090, CQ.Regalona.r1.3AG0019910, CQ.Regalona.r1.3BG0004830, CQ.Regalona.r1.4AG0006640, CQ.Regalona.r1.4AG0010830, CQ.Regalona.r1.4BG0015240, CQ.Regalona.r1.4BG0015250, CQ.Regalona.r1.4BG0015260, CQ.Regalona.r1.5AG0008540, CQ.Regalona.r1.5AG0009550, CQ.Regalona.r1.5AG0021190, CQ.Regalona.r1.5AG0026750, CQ.Regalona.r1.5BG0010390, CQ.Regalona.r1.6BG0012420, CQ.Regalona.r1.6BG0012430, CQ.Regalona.r1.6BG0016550, CQ.Regalona.r1.7AG0005700, CQ.Regalona.r1.7BG0006550, CQ.Regalona.r1.7BG0016580, CQ.Regalona.r1.7BG0020100, CQ.Regalona.r1.8AG0000980, CQ.Regalona.r1.8BG0008690, CQ.Regalona.r1.8BG0014050, CQ.Regalona.r1.9AG0006160, CQ.Regalona.r1.9AG0015320, CQ.Regalona.r1.9AG0021130, CQ.Regalona.r1.9BG0000090, CQ.Regalona.r1.9BG0010710, CQ.Regalona.r1.9BG0016920, CQ.Regalona.r1.9BG0017650
Arecaceae	Cocos nucifera	2	COCNU_01G001520, COCNU_12G002670
Arecaceae	Phoenix dactylifera	2	gene-LOC103712427, gene-LOC103712617
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2166.V1.1, AsparagusV1_03.204.V1.1
Asteraceae	Flaveria trinervia	15	Ftri10G06315, Ftri11G12249, Ftri13G03477, Ftri13G10822 ... Ftri16G12739, Ftri17G09667, Ftri17G11537, Ftri2G08266, Ftri2G16622, Ftri2G33168, Ftri3G15163, Ftri4G29638, Ftri7G03263, Ftri7G15613, Ftri7G17197
Brassicaceae	Arabidopsis thaliana	1	AT4G08267.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10029312m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp3g28010.v2.2, Sp4g03270.v2.2, Sp4g08500.v2.2 ... Sp4g08510.v2.2, Sp7g04680.v2.2, Sp7g11960.v2.2, Sp7g14400.v2.2, SpUn0001_0940.v2.2, SpUn0447_0010.v2.2
Brassicaceae	Brassica nigra	14	BniB01g037390.2N, BniB01g039280.2N, BniB03g065200.2N ... BniB05g034280.2N, BniB05g058810.2N, BniB06g006420.2N, BniB06g006430.2N, BniB06g060230.2N, BniB07g006850.2N, BniB07g046130.2N, BniB08g058800.2N, BniB08g058810.2N, BniB08g061920.2N, BniB08g061930.2N
Plantaginaceae	Plantago ovata	46	Pov_00007412, Pov_00007896, Pov_00009569, Pov_00010893 ... Pov_00010945, Pov_00011098, Pov_00011099, Pov_00011516, Pov_00011957, Pov_00011977, Pov_00018245, Pov_00018565, Pov_00019250, Pov_00019792, Pov_00019793, Pov_00021832, Pov_00023071, Pov_00023072, Pov_00023073, Pov_00024977, Pov_00025580, Pov_00026561, Pov_00026682, Pov_00026685, Pov_00026686, Pov_00031039, Pov_00031043, Pov_00031244, Pov_00031248, Pov_00031275, Pov_00032971, Pov_00032972, Pov_00035284, Pov_00035575, Pov_00036385, Pov_00036663, Pov_00036664, Pov_00037237, Pov_00037238, Pov_00037239, Pov_00037242, Pov_00037243, Pov_00037244, Pov_00037245, Pov_00037246, Pov_00038893
Plumbaginaceae	Limonium bicolor	7	Lb0G36950, Lb0G38177, Lb1G05733, Lb3G17076, Lb4G23824 ... Lb5G28693, Lb6G31140
Poaceae	Echinochloa crus-galli	24	AH01.2174, AH01.3016, AH01.3661, AH03.2063, AH05.3165 ... AH05.3865, AH06.1687, AH09.1670, BH02.299, BH03.1022, BH05.2536, BH05.28, BH06.1533, BH06.201, BH08.577, BH09.2980, CH01.3076, CH01.4282, CH01.4305, CH02.961, CH04.2297, CH05.2635, CH07.2854, CH08.333
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0014900, gene-QOZ80_5AG0373090 ... gene-QOZ80_7AG0567430
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0137810.1.CDS1 ... HORVU.MOREX.r3.3HG0267300.1.CDS1, HORVU.MOREX.r3.5HG0519390.1, HORVU.MOREX.r3.5HG0537960.1.CDS1, HORVU.MOREX.r3.7HG0706380.1.CDS1, HORVU.MOREX.r3.7HG0710420.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_021890, gene-QYE76_021891, gene-QYE76_046406
Poaceae	Oryza coarctata	7	Oco04G023210, Oco08G004740, Oco09G009670, Oco10G009800 ... Oco17G002690, Oco19G003070, Oco24G009810
Poaceae	Oryza sativa	1	LOC_Os05g34240.3
Poaceae	Paspalum vaginatum	8	gene-BS78_01G485900, gene-BS78_02G064000, gene-BS78_K102600 ... gene-BS78_02G179400, gene-BS78_04G222300, gene-BS78_06G134700, gene-BS78_06G262700, gene-BS78_K172500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0302829
Poaceae	Sporobolus alterniflorus	17	Chr02G026420, Chr04G015530, Chr05G007990, Chr05G019370 ... Chr08G005630, Chr08G007200, Chr11G014100, Chr11G014110, Chr12G016070, Chr15G014890, Chr19G012580, Chr19G016180, Chr21G009820, Chr23G010360, Chr24G012870, Chr28G006310, Chr30G012590
Poaceae	Triticum dicoccoides	1	gene_TRIDC1BG046430
Poaceae	Zea mays	7	Zm00001eb020770_P001, Zm00001eb046810_P001 ... Zm00001eb083030_P001, Zm00001eb133600_P001, Zm00001eb199040_P001, Zm00001eb327730_P001, Zm00001eb410340_P001
Poaceae	Zoysia japonica	3	nbis-gene-32980, nbis-gene-44275, nbis-gene-7917
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-29432, nbisL1-mrna-7339
Salicaceae	Populus euphratica	2	populus_peu06494, populus_peu35417
Solanaceae	Lycium barbarum	5	gene-LOC132607920, gene-LOC132611854, gene-LOC132626776 ... gene-LOC132629044, gene-LOC132637694
Solanaceae	Solanum chilense	1	SOLCI003751500
Solanaceae	Solanum pennellii	6	gene-LOC107001256, gene-LOC107023099, gene-LOC107027472 ... gene-LOC114074468, gene-LOC114076122, gene-LOC114078369
Tamaricaceae	Reaumuria soongarica	8	MSTRG.16549_chr09_+, MSTRG.2730_chr02_-, MSTRG.74_chr01_- ... gene_1591, gene_16466, gene_5011, gene_5110, gene_902
Tamaricaceae	Tamarix chinensis	2	TC01G1963, TC06G2818