Basic Information
Locus ID:
AH03.2028
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 35584721 | 35590517 | - | AH03.2028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 81,782.11 Da | 45.97 | 71.33 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 692 | 734 | 7.5E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 689 | 735 | 2.65E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 687 | 766 | 1.1E-11 | - |
| SMART | SM00647 | ibrneu5 | 690 | 748 | 0.16 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 616 | 682 | 0.0013 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 563 | 754 | 14.263629 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 546 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 1.5E-20 |
| RefSeq | XP_025801584.1 | probable E3 ubiquitin-protein ligase RNF217 [Panicum hallii] | 7.89E-149 |
| Q8BKD6 | E3 ubiquitin-protein ligase RNF144B OS=Mus musculus OX=10090 GN=Rnf144b PE=2 SV=2 | 3.8E-7 | |
| TrEMBL | A0A2T8KQM7 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G275000 PE=3 SV=1 | 7.03E-148 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |