Basic Information
Locus ID:
AH03.1937
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 34629458 | 34632375 | + | AH03.1937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 90,443.85 Da | 52.21 | 70.42 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 446 | 495 | 6.3E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 674 | 723 | 6.5E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 740 | 791 | 5.4E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 220 | 269 | 2.1E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 447 | 500 | 9.18E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 587 | 668 | 1.35E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 214 | 1.88E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 357 | 440 | 8.67E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 674 | 727 | 4.59E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 734 | 787 | 1.27E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 274 | 1.48E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 584 | 673 | 2.5E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 355 | 444 | 1.7E-22 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 721 | 799 | 9.8E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 218 | 8.2E-22 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 205 | 269 | 9.2E-12 | IPR002867 |
| SMART | SM00184 | ring_2 | 362 | 409 | 0.14 | IPR001841 |
| SMART | SM00184 | ring_2 | 590 | 637 | 0.22 | IPR001841 |
| SMART | SM00184 | ring_2 | 34 | 80 | 1.2 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 431 | 495 | 1.5E-8 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 659 | 723 | 9.4E-10 | IPR002867 |
| SMART | SM00184 | ring_2 | 753 | 786 | 2.6 | IPR001841 |
| SMART | SM00184 | ring_2 | 136 | 183 | 0.11 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 735 | 792 | 0.76 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 181 | 9.715714 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 590 | 635 | 10.084539 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 586 | 796 | 25.374996 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 386 | 17.211021 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 362 | 407 | 9.553431 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 380 | 389 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 608 | 617 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 154 | 163 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 773 | 782 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 7.53E-65 |
| RefSeq | XP_004956836.1 | uncharacterized protein LOC101753869 [Setaria italica] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 1.22E-29 | |
| TrEMBL | K3ZQS9 | RBR-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101753869 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology