Basic Information
Locus ID:
AH03.1926
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 34463748 | 34464587 | + | AH03.1926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 30,685.48 Da | 23.07 | 88.14 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 136 | 1.6E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 224 | 5.6E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 268 | 1.59E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 271 | 2.1E-95 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 3.54E-141 |
| RefSeq | XP_004956826.1 | probable CCR4-associated factor 1 homolog 7 [Setaria italica] | 2.0E-202 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 3.4E-140 | |
| TrEMBL | A0A368Q0W9 | poly(A)-specific ribonuclease OS=Setaria italica OX=4555 GN=SETIT_2G205600v2 PE=3 SV=1 | 4.52E-201 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology