Basic Information
Locus ID:
AH03.1867
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 33690466 | 33694781 | + | AH03.1867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 41,877.38 Da | 50.00 | 84.29 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.23839E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 339 | 375 | 4.2E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 160 | 195 | 7.7E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 2.3E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 2.0E-20 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 201 | 1.15E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 1.84E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 253 | 318 | 5.89E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 383 | 1.69E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 247 | 312 | 1.0E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 331 | 379 | 6.8E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 4.1E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 150 | 200 | 1.6E-20 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.4E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 340 | 377 | 2.5E-8 | IPR015940 |
| SMART | SM00727 | CBM | 255 | 298 | 5.1E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 157 | 197 | 2.3E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 383 | 3.3E-109 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 155 | 198 | 12.137243 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 338 | 378 | 13.751749 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.847486 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 6.0E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 334 | 350 | 6.0E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 366 | 381 | 6.0E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 365 | 6.0E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 5.94E-134 |
| RefSeq | XP_004956778.1 | probable ubiquitin receptor RAD23 [Setaria italica] | 2.26E-213 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 4.27E-163 | |
| TrEMBL | A0A4U6W6D2 | Ubiquitin receptor RAD23 OS=Setaria viridis OX=4556 GN=SEVIR_2G209200v2 PE=3 SV=1 | 5.12E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology